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Plot catalogue · Variation and association

From one call to a cohort pattern

Choose by the unit that carries the result: one position, two breakpoints, a variable alignment column, a sample-by-site cell or a statistic tested across the genome.

6 track types5 data shapes
Site-wise molecular selection evidence and signed omega effects aligned to protein domains Tested coding positionSelectionTrackSeparate p-value or posterior evidence from the direction and magnitude of the synonymous-to-nonsynonymous rate ratio.Open reference Variant calls aligned to coverage and genes Point eventVariantTrackSNPs, indels or other named positions shown as lollipops or dense ticks with value and category.Open reference Structural variants drawn as arcs between breakpoints Two breakpointsStructuralTrackDeletions, inversions, duplications or translocations as span-aware arcs weighted by support.Open reference Variable alignment sites ordered by a phylogeny Variable columns onlySnpTrackInvariant columns removed so shared substitutions become visible blocks across ordered samples.Open reference A genotype matrix aligned below association statistics Sample × siteMatrixTrackGenotype or presence cells where zero, missing and every categorical state remain distinct.Open reference Association statistics across every contig of an assembly Genome-wide statisticManhattanTrackAssociation values, explicit threshold and highlighted hits on a shared genomic or assembly axis.Open reference

Choose the unit of evidence

Evidence Start with Pair it with
one named position VariantTrack FeatureTrack or CodonTrack
two linked breakpoints StructuralTrack SplitReadTrack for molecule-level support
differences in an alignment SnpTrack TreeTrack to order the rows
a state for each sample and site MatrixTrack ManhattanTrack above it
one statistic per tested position ManhattanTrack GenomeTrack for multi-contig context
molecular-selection evidence and rate effect SelectionTrack FeatureTrack or CodonTrack