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Plot catalogue · Phylogeny and clades

Put topology beside the evidence

These views preserve terminal order, branch length, support and typed metadata. They render an existing analysis; they do not infer a tree, clock, ancestral state, migration event or transmission chain.

3 tree tracks4 selection views
Tree geometries, ancestral reconstruction, molecular evolution, comparison, phylodynamics and lineage surveillance Topology × genome × timeEvolutionary surveillance atlasMove from tree geometry through ancestral evidence and molecular selection to phylodynamic estimates and observed lineage change.Open catalogue A molecular-selection atlas with branch rate mixtures, recurrent-event links and site-wise frequentist and posterior scans Tree × codon modelMolecular selection atlasKeep weighted branch rate classes, recurrence, statistical evidence and signed site effects in separate visual channels.Open guide Node bubbles, ancestral composition donuts, clade fields, an aligned MSA and aligned domain architectures Tree × node and row dataPhylogenetic data facesAttach abundance, composition and clade context to nodes, then align sequences or domains by descent.Open guide Rectangular, circular and unrooted trees with support, branch events and evolutionary scale bars One annotated topologyTreeTrackRoot by node, outgroup or midpoint; then draw rectangular, radial or unrooted with support, events, scales and iTOL-style metadata.Open reference Two trees joined through their matching terminal taxa Two topologiesTanglegramTrackMatching taxa joined between trees, with crossing minimisation that changes order but never topology.Open reference Genomic intervals painted across the clades that carry them Tree × genomic intervalCladeTrackCoordinate blocks whose height is a clade, with non-carrier rows cut out rather than hidden.Open reference A circular time tree and cladogram around a map Tree × supplied geographyPhyloMapA circular tree around a central projection with aggregated, individual or absent sample-to-place links.Open guide

Choose what topology is aligned to

Analytical structure Start with
one tree and terminal metadata TreeTrack
ancestral probabilities, direct events or branch uncertainty TreeTrack with AncestralStateLayer, BranchEventLayer or BranchIntervalLayer
abundance or composition on internal nodes TreeTrack with NodeGlyph
aligned residues or domains ordered by descent MsaTrack::tree or DomainTrack::tree
two trees over matching terminal names TanglegramTrack
genomic intervals carried by named taxa CladeTrack
terminal annotations matched to supplied coordinates PhyloMap
inferred population trajectory through time PhylodynamicTrack
observed lineage counts and denominators through time SurveillanceTrack