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Visual catalogue

Find the plot that matches the question

Start from the biological structure in the data, not from a Rust type name. Each route below leads to a small family of plots, a visual example and the exact reference entry for every component.

33 genomic tracks 3 standalone drawings 8 biological routes

Browse by biological task

Coverage, sequence and annotation over one locus 5 track types Signal and sequence Depth, signed windows, bases, methylation and motifs. Explore signal plots Transcription units and genes over genomic coordinates 6 track types Annotation and coordinates Genes, transcripts, reading frames, rulers and keys. Explore annotation plots Association statistics aligned to genes and a genotype matrix 5 track types Variation and association Variants, structural events, variable sites and genotypes. Explore variation plots Read pileup with strand, mismatches and gaps 4 track types Reads and molecules Pileups, split alignments, methylation patterns and raw signal. Explore molecule plots A dotplot and synteny ribbons comparing two sequences 4 track types Comparisons and alignments MSAs, dotplots, synteny and homologous loci. Explore comparison plots Circular phylogenies around an orthographic map 3 tracks + 1 drawing Phylogeny and clades Trees, tanglegrams, clade intervals and phylogeography. Explore phylogeny plots An atlas of phylogenetic geometry, ancestral reconstruction, molecular selection, genomic layers, phylodynamics and lineage surveillance 2 temporal tracks + tree layers Evolution and surveillance Ancestral states, branch events, uncertainty, selection, skyline trajectories and lineage alerts. Explore evolutionary plots World maps under three geographic projections 2 tracks + 2 drawings Whole genomes and geography Assemblies, ideograms, circular genomes and world maps. Explore context plots

Choose from the shape of the data

I have SAM alignments or moleculesStart with pileups, split reads or per-molecule calls. I have VCF calls, sites or genotypesStart with variants, variable sites, matrices or association statistics. I have Newick, BEAST, NHX or NexusStart with a tree, aligned clade blocks or circular phylogeography. I have ancestral, codon-model or time-series resultsStart with branch layers, a site scan, a phylodynamic interval or lineage composition. I have two or more sequencesStart with an MSA, dotplot, synteny view or homologous locus. I have a value for every base or windowStart with coverage, a signed window track or per-site methylation. I need global contextStart with an assembly track, ideogram, circular genome or map.

Tracks, drawings and sheets

TrackShares a figure band

Usually maps genomic position through the same horizontal scale as its neighbours.

DrawingOwn coordinate system

`Rings`, `Map` and `PhyloMap` render a complete circular or geographic document.

PanelsComposes finished views

Places figures and drawings on one labelled, aligned manuscript sheet.

Need the exhaustive API behaviour rather than a visual route? Open the alphabetical track reference, or jump to the worked recipes when the desired output is already clear.