Documentation
The long versions: every option, every file and column, and how each decision is made. New to Recore? Start on the front page, it takes two minutes.
Getting started
Guide
ParametersEvery option, with what it changes.
Matrix policiesThe three policies and the quality guard.
Output filesEvery table, column by column.
The reportEvery pane and control of the viewer.
How it works
Step by step, illustratedSeven animated steps from an empty cell to a decision.
AlgorithmEach step of the pipeline.
Evidence statesWhat each cell of the states matrix means.
Rescue typesWhat Recore saw where a gene was found.
Evolutionary eventsHow an event is called, and how to word it.
Limits and speedWhat Recore does not claim; run time and memory.