AMAP

How AMAP decides

One gene at a time, through the seven steps of the correction. Pick a story, then step through it or play it. Every gene here is a real one, from runs on genomes whose right answer is known; point at a gene for its coordinates.

    Bakta's call reference protein, aligned what AMAP keeps dropped pseudogene

    Each story follows one stretch of genome through the rules. A real run does this for every gene at once, then annotates the proteins with eggNOG, looks for duplications and builds the pangenome. Every rule and threshold, in the correction algorithm.

    Go deeper

    The same steps, with every threshold and every file.

    The correction algorithmEvery rule and threshold, drawn on real genes. The workflowEach step of the pipeline, on the metro map. OutputsEvery folder and file, and what a healthy run looks like. TutorialCDC1551 from an empty folder, number by number. Custom referenceAny organism, against a trusted annotation of your own. Duplication metricsWhat the network numbers mean.